| 19/06/1999 | UE Lleida | - | CP Mérida | 2:3 | ||
| SD Compostela | - | CD Ourense | 3:0 | |||
| 20/06/1999 | SD Eibar | - | CD Toledo | 3:0 | ||
| Rayo Vallecano | - | CD Badajoz | 1:1 | |||
| CD Logroñés | - | CD Leganés | 0:0 | |||
| UD Las Palmas | - | FC Barcelona B | 4:1 | |||
| Atlético Madrid B | - | CA Osasuna | 4:0 | |||
| CD Numancia | - | Recreativo Huelva | 3:0 | |||
| Sporting Gijón | - | Albacete | 4:2 | |||
| Málaga CF | - | Sevilla FC | 0:1 | |||
| RCD Mallorca B | - | Hércules CF | 1:3 |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Málaga CF | 42 | 22 | 13 | 7 | 72:47 | 25 | 79 |
| 2 |
|
Atlético Madrid B | 42 | 21 | 11 | 10 | 73:51 | 22 | 74 |
| 3 |
|
CD Numancia | 42 | 21 | 10 | 11 | 68:40 | 28 | 73 |
| 4 |
|
Sevilla FC | 42 | 20 | 11 | 11 | 66:50 | 16 | 71 |
| 5 |
|
Rayo Vallecano | 42 | 19 | 14 | 9 | 64:49 | 15 | 71 |
| 6 |
|
UD Las Palmas | 42 | 17 | 17 | 8 | 57:38 | 19 | 68 |
| 7 |
|
CD Toledo | 42 | 18 | 11 | 13 | 54:49 | 5 | 65 |
| 8 |
|
SD Compostela | 42 | 16 | 13 | 13 | 60:53 | 7 | 61 |
| 9 |
|
CP Mérida | 42 | 15 | 14 | 13 | 48:41 | 7 | 59 |
| 10 |
|
UE Lleida | 42 | 15 | 14 | 13 | 52:50 | 2 | 59 |
| 11 |
|
Sporting Gijón | 42 | 16 | 11 | 15 | 47:47 | 0 | 59 |
| 12 |
|
Recreativo Huelva | 42 | 14 | 16 | 12 | 40:35 | 5 | 58 |
| 13 |
|
CA Osasuna | 42 | 15 | 12 | 15 | 44:51 | -7 | 57 |
| 14 |
|
CD Badajoz | 42 | 12 | 15 | 15 | 35:39 | -4 | 51 |
| 15 |
|
Albacete | 42 | 12 | 14 | 16 | 38:43 | -5 | 50 |
| 16 |
|
CD Logroñés | 42 | 12 | 12 | 18 | 48:57 | -9 | 48 |
| 17 |
|
CD Leganés | 42 | 10 | 17 | 15 | 36:44 | -8 | 47 |
| 18 |
|
SD Eibar | 42 | 13 | 8 | 21 | 42:56 | -14 | 47 |
| 19 |
|
RCD Mallorca B | 42 | 12 | 10 | 20 | 52:64 | -12 | 46 |
| 20 |
|
FC Barcelona B | 42 | 13 | 5 | 24 | 51:68 | -17 | 44 |
| 21 |
|
Hércules CF | 42 | 10 | 10 | 22 | 38:66 | -28 | 40 |
| 22 |
|
CD Ourense | 42 | 7 | 6 | 29 | 35:82 | -47 | 27 |